Information for 9-GGGAGCTGTCCHC (Motif 9)

C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C
Reverse Opposite:
C A T G C A G T A C T G A C T G G T C A A G T C C G T A A C T G A G T C A C G T A G T C A G T C A G T C
p-value:1e-11
log p-value:-2.548e+01
Information Content per bp:1.844
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif28.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets50.6 +/- 20.4bp
Average Position of motif in Background50.7 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0140.1_Pknox1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGGAGCTGTCCHC--
AAAGACCTGTCAATCC
 A C G T C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGGAGCTGTCCHC
CGGAGC-------
 C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGGAGCTGTCCHC--
AACGAGCTGTCAATAC
 A C G T C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

Myod1/MA0499.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGGAGCTGTCCHC
TGCAGCTGTCCCT
 C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGGAGCTGTCCHC--------
-GGAGCTGTCCATGGTGCTGA
 C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGCTGTCCHC---
NNNCAGCTGTCAATATN
 A C G T C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGAGCTGTCCHC--
AAAGACCTGTCAATAC
 A C G T C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Myog/MA0500.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGCTGTCCHC
NNGCAGCTGTC---
 A C G T C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGAGCTGTCCHC--
AAGCACCTGTCAATAT
 A C G T C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGAGCTGTCCHC--
AACTAGCTGTCAATAC
 A C G T C T A G A C T G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A G T C A G T C G T C A G T A C A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C