Information for 13-CGCGCGTCGG (Motif 19)

A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G
Reverse Opposite:
A T G C T G A C C T A G C G T A A G T C A C T G A T G C C T A G A G T C A T C G
p-value:1e-7
log p-value:-1.761e+01
Information Content per bp:1.842
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif75.1
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets34.8 +/- 21.7bp
Average Position of motif in Background52.3 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0095.1_Zfp161_1/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CGCGCGTCGG-
TGGCGCGCGCGCCTGA
 A C G T A C G T A C G T A C G T A C G T A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G A C G T
C A G T C T A G C T A G A T G C T C A G G A T C C T A G A G T C C T A G A G T C C T A G G A T C G A T C G A C T C T A G C G T A

Tcfl5/MA0632.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGCGCGTCGG
GGCACGTGCC--
 A C G T A C G T A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G
C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------CGCGCGTCGG
ATAAAGGCGCGCGAT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGCGCGTCGG
GGCACGCGTC--
 A C G T A C G T A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T

PB0179.1_Sp100_2/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGCGCGTCGG-------
--TCCGTCGCTTAAAAG
 A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CGCGCGTCGG
ATAAGGGCGCGCGAT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGCGCGTCGG-----
GGNGCGNCTGTTNNN
 A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G A C G T A C G T A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGCGCGTCGG-
-VBSYGTCTGG
 A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGCGCGTCGG
BGCACGTA--
 A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGCGCGTCGG
AGCGCGCC--
 A T G C A C T G A G T C T A C G A G T C A C T G G C A T A G T C A C T G A T C G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T