Information for 11-CCTSSAGAMTCCY (Motif 14)

A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T
Reverse Opposite:
C T G A A C T G A C T G C G T A A C G T A C G T A G T C A C G T A T G C A T G C C G T A A C T G A C T G
p-value:1e-9
log p-value:-2.240e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.0 +/- 29.6bp
Average Position of motif in Background44.8 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCTSSAGAMTCCY-----
-TACGAGACTCCTCTAAC
 A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCTSSAGAMTCCY
TGACCTNTAGTAACCC
 A C G T A C G T A C G T A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CCTSSAGAMTCCY
---GGAAATTCCC
 A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CCTSSAGAMTCCY
---GGAAATTCCC
 A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CCTSSAGAMTCCY---
TGACCTAAAGTAACCTCTG
 A C G T A C G T A C G T A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

EBF1/MA0154.3/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CCTSSAGAMTCCY
ANTCCCTNGGGAAT---
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T
C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCTSSAGAMTCCY--
--AGGGGATTCCCCT
 A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T A C G T A C G T
A C G T A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CCTSSAGAMTCCY
TTGACCGAGAATTCC
 A C G T A C G T A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CCTSSAGAMTCCY---
GNNAGCTAATCCCCCN
 A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CCTSSAGAMTCCY-
--GGGGGAATCCCC
 A G T C A G T C A C G T A T C G A T C G C G T A A C T G T C G A G T C A A C G T A G T C A G T C A G C T A C G T
A C G T A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C