Information for 18-CCACAGACAAAGG (Motif 24)

A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G
Reverse Opposite:
A G T C T G A C A C G T A C G T A C G T A C T G A C G T A G T C C G A T A T C G A C G T A C T G A C T G
p-value:1e-9
log p-value:-2.237e+01
Information Content per bp:1.786
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif19.4
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets40.4 +/- 25.0bp
Average Position of motif in Background45.7 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCACAGACAAAGG---
AAACAGACAAAGGAAT
 A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CCACAGACAAAGG
---AAAACAAAGG
 A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGACAAAGG
AAACCACAGAN-----
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CCACAGACAAAGG
-----AACAAAGG
 A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CCACAGACAAAGG
-----RACAAWGG
 A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCACAGACAAAGG
NWAACCACADNN-----
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCACAGACAAAGG
---VRRACAAWGG
 A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CCACAGACAAAGG
---GGAACAAAGR
 A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CCACAGACAAAGG
------ACAAAG-
 A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCACAGACAAAGG----
AGAAGAACAAAGGACTA
 A G T C A G T C C G T A A T G C G C T A T C A G G T C A G T A C G T C A G T C A C G T A A C T G T C A G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A