Information for 10-BATTGCAATAAAATAA (Motif 17)

A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A
Reverse Opposite:
A G C T C G A T T C G A C G A T A C G T A C G T A C G T C T G A A C G T A C G T C T A G A T G C C G T A C G T A C A G T T G C A
p-value:1e-11
log p-value:-2.658e+01
Information Content per bp:1.810
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.3 +/- 13.7bp
Average Position of motif in Background69.2 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:BATTGCAATAAAATAA--
-AATGCAATAAAATTTAT
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A A C G T A C G T
A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:BATTGCAATAAAATAA-
-CTACCAATAAAATTCT
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A A C G T
A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.76
Offset:4
Orientation:forward strand
Alignment:BATTGCAATAAAATAA
----GCAATAAAA---
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A
A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.76
Offset:4
Orientation:forward strand
Alignment:BATTGCAATAAAATAA
----GTCATAAAAN--
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.75
Offset:4
Orientation:forward strand
Alignment:BATTGCAATAAAATAA
----CCAATAAAAA--
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A
A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.75
Offset:4
Orientation:forward strand
Alignment:BATTGCAATAAAATAA
----CCAATAAAAA--
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A
A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.74
Offset:3
Orientation:forward strand
Alignment:BATTGCAATAAAATAA
---GGTAATAAAAA--
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A
A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.74
Offset:4
Orientation:forward strand
Alignment:BATTGCAATAAAATAA
----CCAATAAAAC--
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A
A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.74
Offset:3
Orientation:forward strand
Alignment:BATTGCAATAAAATAA
---NCYAATAAAA---
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A
A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:10
Score:0.74
Offset:4
Orientation:forward strand
Alignment:BATTGCAATAAAATAA
----GCAATAAAAA--
 A C G T G T C A A C G T A C G T A T C G A G T C C G T A C G T A A G C T C G T A C G T A G T C A C G T A A G C T C G T A C T G A
A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T