Information for 1-CGGGCGMGTTCAGAGA (Motif 3)

G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C A C G T A G T C A C G T A C T G T G C A G T C A G T A C A C T G A T G C C T A G A T G C T G A C A T G C C T A G
p-value:1e-15
log p-value:-3.600e+01
Information Content per bp:1.738
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.9 +/- 20.0bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGGGCGMGTTCAGAGA-----
----CAAATCCAGACATCACA
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CGGGCGMGTTCAGAGA----
---NNNANTGCAGTGCNNTT
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:CGGGCGMGTTCAGAGA---
---------GCAGTGATTT
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:4
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CGGGCGMGTTCAGAGA-----
------GNNACCGAGAATNNN
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:CGGGCGMGTTCAGAGA---
---------CCAGACRSVB
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NR2C2/MA0504.1/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CGGGCGMGTTCAGAGA---
----AGGGGTCAGAGGTCA
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:CGGGCGMGTTCAGAGA-
---------CCAGACAG
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CGGGCGMGTTCAGAGA---
----AGAGTCCAAAGTCCA
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CGGGCGMGTTCAGAGA
------ACATCAAAGG
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CGGGCGMGTTCAGAGA---
-----GAGGTCAAAGGTCA
 G A T C T A C G A C T G A T C G G A T C T A C G G T A C C A T G C A G T A C G T A G T C G T C A A C T G C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A