Information for 15-CTVGGCBBCCTCG (Motif 28)

A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
Reverse Opposite:
A T G C A C T G C G T A A C T G A C T G T A C G T A C G A C T G A G T C A G T C A G C T C G T A A C T G
p-value:1e-6
log p-value:-1.451e+01
Information Content per bp:1.858
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif14.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets55.3 +/- 14.5bp
Average Position of motif in Background40.1 +/- 40.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTVGGCBBCCTCG
---GGCGCGCT--
A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTVGGCBBCCTCG-
NNNGGGGCGCCCCCNN
A C G T A C G T A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTVGGCBBCCTCG
CTAGGCCT-----
A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTVGGCBBCCTCG
GCTCGGSCTC----
A C G T A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTVGGCBBCCTCG
WDNCTGGGCA------
A C G T A C G T A C G T A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTVGGCBBCCTCG
TGCCTGCGYCMCCTT-
A C G T A C G T A C G T A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTVGGCBBCCTCG
GYCTGGYYTNTGTCA
A C G T A C G T A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CTVGGCBBCCTCG
CNAGGCCT-----
A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CTVGGCBBCCTCG
GCTCCGCCCMCY--
A C G T A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:10
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CTVGGCBBCCTCG
GGGGCCGAGGCCTG----
A C G T A C G T A C G T A C G T A C G T A G T C A C G T T C G A A C T G A C T G A G T C A G T C A G T C A G T C A G T C A C G T A G T C A T C G
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T