Information for 6-GGGTCAGGGT (Motif 24)

C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T
Reverse Opposite:
T C G A A G T C A T G C A T G C A C G T T A C G C G T A T G A C A T G C A G T C
p-value:1e-8
log p-value:-1.881e+01
Information Content per bp:1.832
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif240.1
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets50.4 +/- 23.5bp
Average Position of motif in Background51.7 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGGTCAGGGT--
AGGTCAAGGTCA
 C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGGTCAGGGT--
AGGTCAAGGTCA
 C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------GGGTCAGGGT
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGGTCAGGGT
AGGTCA----
 C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GGGTCAGGGT
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGGTCAGGGT
AGRGGTCA----
 A C G T A C G T C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GGGTCAGGGT-
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------GGGTCAGGGT-
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGGTCAGGGT-----
AGGTCACCCTGACCT
 C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T A C G T A C G T A C G T A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGGTCAGGGT
TRAGGTCA----
 A C G T A C G T C T A G A T C G A C T G G C A T A T G C G T C A A T C G A T C G A C T G A G C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T