Information for 11-AGAAGTTCACGACTCT (Motif 23)

C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T
Reverse Opposite:
C G T A A C T G C T G A A C T G A C G T A G T C A C T G A C G T A C T G C G T A C T G A T A G C A C G T A C G T A T G C A C G T
p-value:1e-4
log p-value:-1.125e+01
Information Content per bp:1.920
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.8 +/- 22.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0076.1_Hoxd11/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT-
ANNATTTTACGACNTNA
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT-
NNNATTTTACGACNNTN
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PB0136.1_IRC900814_2/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT----
----TTTTACGACTTTCCAT
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

Hoxa11/MA0911.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT
--ANTTTTACGACC--
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T
A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C A C G T A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT-
-NNNTTTTACGACNTTN
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T A C G T
A C G T G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT-
GNNNTTTTACGACCTNA
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

PH0047.1_Hoxa11/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT-
-NNGTTTTACGACTTTA
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T A C G T
A C G T G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT-
-ANNTTTTACGACNTNN
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T A C G T
A C G T T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXC11/MA0651.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT
---NTTTTACGACC--
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T
A C G T A C G T A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGAAGTTCACGACTCT
---NTTTTACGACC--
 C G T A A T C G C G T A C G T A A C T G A G C T C G A T A G T C C G T A A G T C A C T G C G T A A G T C A G C T A G T C A C G T
A C G T A C G T A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C A C G T A C G T