Information for 1-YTGCAWGSCKRYGSCY (Motif 1)

A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
Reverse Opposite:
C T A G A C T G A T G C A G T C C T G A A G C T G T C A A C T G A T C G A G T C C G T A A C G T A C T G A G T C G T C A C T A G
p-value:1e-16
log p-value:-3.848e+01
Information Content per bp:1.809
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 20.4bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:1
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:YTGCAWGSCKRYGSCY
-----TGCCTGAGGCN
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:2
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:YTGCAWGSCKRYGSCY
-----NGCCTNAGGCN
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:YTGCAWGSCKRYGSCY
-----NGCCTGAGGCN
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:YTGCAWGSCKRYGSCY
TTGCGTGCVA------
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.51
Offset:2
Orientation:forward strand
Alignment:YTGCAWGSCKRYGSCY
--ACATGCCCGGGCAT
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
A C G T A C G T C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:YTGCAWGSCKRYGSCY--
---ANTGCCTGAGGCAAN
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------YTGCAWGSCKRYGSCY
AATCGCACTGCATTCCG------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--YTGCAWGSCKRYGSCY
ATTTGCATAACAAAG---
 A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----YTGCAWGSCKRYGSCY
GGGATTGCATNN--------
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--YTGCAWGSCKRYGSCY
ATTTGCATAACAATG---
 A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G A T A C T G A T G C G T A C A C G T C T G A A G C T A C T G A T C G A G T C A G T C
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T A C G T A C G T