Information for 12-CGTTGGTTCC (Motif 19)

A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A C G T A A G T C G T A C C G T A C G T A A G T C A C T G
p-value:1e-5
log p-value:-1.176e+01
Information Content per bp:1.966
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.7 +/- 30.8bp
Average Position of motif in Background61.9 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL007.1_BREd/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGTTGGTTCC
-GTTTGTT--
 A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C
A C G T C T A G A C G T C A G T A C G T A C T G A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGTTGGTTCC
YCTTTGTTCC
 A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGTTGGTTCC
CCTTTGTTTT
 A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CGTTGGTTCC---
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

SPIB/MA0081.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CGTTGGTTCC---
------TTCCTCT
 A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CGTTGGTTCC---
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGTTGGTTCC-
-TKCTGTTCCA
 A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T
A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGTTGGTTCC
NCCATTGTTC-
 A C G T A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CGTTGGTTCC---
---ATTTTCCATT
 A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGTTGGTTCC--
RGTTAGTGCCCY
 A G T C A C T G A C G T A C G T A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C G T
C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T