Information for 3-KTTGGCCACYRGRGGC (Motif 4)

A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C
Reverse Opposite:
A T C G A G T C A G T C A G C T A G T C A G C T C T G A C T A G A C G T C T A G A C T G G T A C A G T C C G T A G T C A G T A C
p-value:1e-24
log p-value:-5.737e+01
Information Content per bp:1.808
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.1 +/- 14.9bp
Average Position of motif in Background24.5 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:KTTGGCCACYRGRGGC-----
--TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:KTTGGCCACYRGRGGC------
--TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:KTTGGCCACYRGRGGC--------
----GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PLAG1/MA0163.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:KTTGGCCACYRGRGGC
-GGGGCCCAAGGGGG-
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C
A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:KTTGGCCACYRGRGGC-
---CACCCCCGGGGGGG
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C A C G T
A C G T A C G T A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:KTTGGCCACYRGRGGC--
---CCCCCCCGGGGGGGT
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C A C G T A C G T
A C G T A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:KTTGGCCACYRGRGGC--
---CCCCCCCGGGGGGGT
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C A C G T A C G T
A C G T A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:KTTGGCCACYRGRGGC
---GTCCCCAGGGGA-
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C
A C G T A C G T A C G T C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:KTTGGCCACYRGRGGC--
---GGTCANYTGAGGWCA
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C A C G T A C G T
A C G T A C G T A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:KTTGGCCACYRGRGGC
NTTGGCANN-------
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C G T C A A G T C A G C T C T A G A C T G C T G A A C T G A C T G T A G C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T