Information for 5-CCCCTGCAGG (Motif 3)

T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G
Reverse Opposite:
A T G C A G T C G C A T A T C G T A G C C T G A A C T G C T A G A T C G A T C G
p-value:1e-39
log p-value:-9.032e+01
Information Content per bp:1.650
Number of Target Sequences with motif169.0
Percentage of Target Sequences with motif19.79%
Number of Background Sequences with motif3010.9
Percentage of Background Sequences with motif6.29%
Average Position of motif in Targets46.4 +/- 26.1bp
Average Position of motif in Background50.2 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCCCTGCAGG---
-CACAGCAGGGGG
 T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G A C G T A C G T A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCCCTGCAGG-----
DCHCAGCAGGRGGCC
 T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.71
Offset:-9
Orientation:forward strand
Alignment:---------CCCCTGCAGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCCCTGCAGG---
CCACACAGCAGGAGA
 A C G T A C G T T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CCCCTGCAGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCCCTGCAGG---
CCACACAGCAGGAGA
 A C G T A C G T T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCCCTGCAGG--
GACCCCCCGCTGTGC
 A C G T A C G T A C G T T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCCCTGCAGG
SNGCACCTGCHS-
 A C G T A C G T A C G T T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCCCTGCAGG
DCTCAGCAGG
 T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCCCTGCAGG--
TGCCCTGAGGGCA
 A C G T T A G C T A G C G A T C T G A C G A C T A T C G T A G C C G T A T A C G T A C G A C G T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A