Information for 9-CTTGTCCCTGCTG (Motif 13)

A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G
Reverse Opposite:
G T A C C G T A A C T G A T G C C G T A A C T G A C T G A C T G C G T A A G T C C G T A C G T A A C T G
p-value:1e-7
log p-value:-1.709e+01
Information Content per bp:1.905
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif10.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.5 +/- 22.8bp
Average Position of motif in Background50.7 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTTGTCCCTGCTG--
---CCCCCTGCTGTG
 A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTTGTCCCTGCTG
-CTGTTCCTGG--
 A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CTTGTCCCTGCTG
GAGCCCTTGTCCCTAA--
 A C G T A C G T A C G T A C G T A C G T A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTGTCCCTGCTG
BNTGDCCTTG---
 A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CTTGTCCCTGCTG---
------CCTGCTGAGH
 A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTTGTCCCTGCTG---
-GGCCYCCTGCTGDGH
 A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTTGTCCCTGCTG-----
---TCNCCTGCTGNGNNN
 A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTTGTCCCTGCTG-----
---TNTCCTGCTGTGNNG
 A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTTGTCCCTGCTG-
NNCNTGACCCCGCTCT
 A C G T A C G T A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTTGTCCCTGCTG-----
---NNTCCTGCTGTGNNN
 A G T C G C A T A C G T A C T G A C G T A G T C A G T C A G T C A C G T A T C G A G T C C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C