Information for 8-GGCGCCCTCCTGT (Motif 11)

A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T
Reverse Opposite:
C G T A A T G C G C T A A T C G A C T G G C T A A C T G A C T G A C T G G A T C A C T G A T G C A G T C
p-value:1e-8
log p-value:-1.941e+01
Information Content per bp:1.788
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif39.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets58.5 +/- 15.8bp
Average Position of motif in Background45.6 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGCGCCCTCCTGT--
GGCCYCCTGCTGDGH
 A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGCGCCCTCCTGT
GGCGCGCT-----
 A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GGCGCCCTCCTGT
NNNGGGGCGCCCCCNN--
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGCGCCCTCCTGT-
GACCCCCCGCTGTG
 A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGCGCCCTCCTGT-
--CCCCCTGCTGTG
 A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGCGCCCTCCTGT--
GACCCCCCGCTGTGC
 A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCGCCCTCCTGT--
GACCCCCCGCTGCGC
 A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T A C G T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

E2F1/MA0024.3/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGCGCCCTCCTGT
TTTGGCGCCAAA----
 A C G T A C G T A C G T A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------GGCGCCCTCCTGT
NNNNTTGGCGCCGANNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T A C G T A C G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCGCCCTCCTGT
GGCGACCACCGA-
 A C T G A T C G A G T C C A T G A G T C G T A C A G T C C G A T A G T C A T G C C A G T A T C G G C A T
A C T G T C A G A T G C C T A G G T C A A G T C A T G C G T C A A G T C G T A C C A T G T G C A A C G T