Information for 3-GCCTCYAGTGGCCAGC (Motif 3)

A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C
Reverse Opposite:
A T C G T A G C A G C T C T A G A T C G T A G C A T G C C G T A A G T C G C A T T C A G A T C G C T G A A C T G A C T G T G A C
p-value:1e-14
log p-value:-3.424e+01
Information Content per bp:1.687
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif117.3
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets56.1 +/- 20.1bp
Average Position of motif in Background53.5 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCCTCYAGTGGCCAGC----
GCCASCAGGGGGCGCYVNNG
 A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCCTCYAGTGGCCAGC
TAGCGCCCCCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GCCTCYAGTGGCCAGC
ANAGTGCCACCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCCTCYAGTGGCCAGC
TGWCCTCARNTGACC---
 A C G T A C G T A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCTCYAGTGGCCAGC
-TCACCTCTGGGCAG-
 A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C
A C G T G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCCTCYAGTGGCCAGC
-CCCCCTTGGGCCCC-
 A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C
A C G T A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GCCTCYAGTGGCCAGC
TGCAGTTCCNNNNNTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C
C G A T T A C G G A T C G C T A T C A G G A C T C G A T G T A C G A T C G T C A T C G A T G A C C G T A C T A G G A C T C T A G C T A G G T A C A G T C C G T A A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:GCCTCYAGTGGCCAGC--
--------TGCCCAGNHW
 A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GCCTCYAGTGGCCAGC
-----CAAAGGTCAG-
 A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:GCCTCYAGTGGCCAGC
------NGTGGGCAT-
 A C T G A G T C G T A C G A C T A T G C A G T C C G T A T C A G G C A T A T C G A T C G A T G C A G T C T C G A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T