Information for 4-CAGYAGAGGTCAG (Motif 2)

A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G G T C A A G T C G T A C A C G T A G T C A C G T T C A G A G T C A C G T A C T G
p-value:1e-17
log p-value:-3.986e+01
Information Content per bp:1.867
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif15.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets66.0 +/- 5.9bp
Average Position of motif in Background53.8 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CAGYAGAGGTCAG---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CAGYAGAGGTCAG--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAGYAGAGGTCAG
---CAAAGGTCAG
 A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CAGYAGAGGTCAG
----AGRGGTCA-
 A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAGYAGAGGTCAG-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGYAGAGGTCAG
AAGGTCACGAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAGYAGAGGTCAG
----TRAGGTCA-
 A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAGYAGAGGTCAG---
---CAAAGGTCAAGGG
 A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGYAGAGGTCAG
ANGNAAAGGTCA-
 A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGYAGAGGTCAG----
GGCGAGGGGTCAAGGGC
 A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G C T A G A C G T A G T C C G T A A C T G A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C