Information for 5-GGGAGGTGCTTGCCCC (Motif 9)

A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A A G T C A G T C A C G T A G T C A G T C A G T C
p-value:1e-7
log p-value:-1.662e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.2 +/- 13.5bp
Average Position of motif in Background8.4 +/- 0.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGGAGGTGCTTGCCCC
AGGGGGCGGGGCTG-----
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GGGAGGTGCTTGCCCC
----GGGGATTCCCCC
 A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

KLF5/MA0599.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGGTGCTTGCCCC
GGGGNGGGGC-------
 A C G T A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGGTGCTTGCCCC
SDGCAGGTGCNS-----
 A C G T A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GGGAGGTGCTTGCCCC
--NAGGTCANTGACCT
 A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

SP1/MA0079.3/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGGAGGTGCTTGCCCC
GGGGGCGGGGC-------
 A C G T A C G T A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GGGAGGTGCTTGCCCC
---AGGGGATTCCCCT
 A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
A C G T A C G T A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

PB0117.1_Eomes_2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGGAGGTGCTTGCCCC
GCGGAGGTGTCGCCTC-
 A C G T A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGGAGGTGCTTGCCCC
RGKGGGCGGAGC-------
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GGGAGGTGCTTGCCCC
GACAGGTGTN------
 A C T G A C T G A C T G C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C A G T C A G T C
C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A A C G T A C G T A C G T A C G T A C G T A C G T