Information for 5-CMTRCTGGGA (Motif 3)

A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A
Reverse Opposite:
C G A T A G T C G T A C A G T C C G T A A C T G A G T C C T G A A C G T A C T G
p-value:1e-24
log p-value:-5.564e+01
Information Content per bp:1.795
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif10.68%
Number of Background Sequences with motif1309.4
Percentage of Background Sequences with motif2.75%
Average Position of motif in Targets50.5 +/- 22.7bp
Average Position of motif in Background50.1 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CMTRCTGGGA--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CMTRCTGGGA
CCTGCTGAGH
 A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CMTRCTGGGA--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---CMTRCTGGGA--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----CMTRCTGGGA
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---CMTRCTGGGA
CCCCCTGCTGTG-
 A C G T A C G T A C G T A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CMTRCTGGGA---
RGSMTBCTGGGAAAT
 A C G T A C G T A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A A C G T A C G T A C G T
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CMTRCTGGGA-
-WDNCTGGGCA
 A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A A C G T
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CMTRCTGGGA
---GCTGTG-
 A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CMTRCTGGGA
GACCCCCCGCTGTG-
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G C T T C A G A G T C A C G T A C T G C A T G A C T G G C T A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T