Information for 2-CYWTTGTTNV (Motif 2)

A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C
Reverse Opposite:
A T C G T C A G T G C A C G T A A G T C G T C A T C G A C G A T C T G A A T C G
p-value:1e-104
log p-value:-2.405e+02
Information Content per bp:1.642
Number of Target Sequences with motif248.0
Percentage of Target Sequences with motif32.29%
Number of Background Sequences with motif2984.3
Percentage of Background Sequences with motif6.28%
Average Position of motif in Targets49.2 +/- 25.9bp
Average Position of motif in Background50.1 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CYWTTGTTNV
CCWTTGTY--
 A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CYWTTGTTNV
CCATTGTTNY
 A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-CYWTTGTTNV
NCCATTGTTC-
 A C G T A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CYWTTGTTNV
NCCATTGTTY-
 A C G T A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CYWTTGTTNV
CCATTGTTYB
 A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CYWTTGTTNV
CCATTGTTC-
 A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CYWTTGTTNV
CCTTTGTT--
 A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CYWTTGTTNV
CCWTTGTYYB
 A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CYWTTGTTNV----
CNNNTATTGTTCNNNNN
 A C G T A C G T A C G T A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CYWTTGTTNV--
NNNCCATTGTGTNAN
 A C G T A C G T A C G T A T G C G A C T G C T A A G C T A C G T A C T G G C A T A C G T A G T C T A G C A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G