Information for 9-AGGGTAATTA (Motif 12)

T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A
Reverse Opposite:
A G C T C G T A C G T A A C G T A G C T G T C A A T G C A G T C G T A C A C G T
p-value:1e-10
log p-value:-2.436e+01
Information Content per bp:1.838
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif102.3
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets46.8 +/- 20.1bp
Average Position of motif in Background49.2 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0049.1_Hoxa2/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:AGGGTAATTA------
AAGGTAATTAGCTCAT
 T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T G C A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A T A C G G A T C G A C T G T A C C G T A C G A T

PH0052.1_Hoxa5/Jaspar

Match Rank:2
Score:0.84
Offset:0
Orientation:forward strand
Alignment:AGGGTAATTA------
ACGGTAATTAGCTCAG
 T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

PH0072.1_Hoxc8/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--AGGGTAATTA----
TTGGGGTAATTAACGT
 A C G T A C G T T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T A C G T A C G T
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T

PH0022.1_Dlx3/Jaspar

Match Rank:4
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-AGGGTAATTA------
NNNGGTAATTATNGNGN
 A C G T T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

PH0053.1_Hoxa6/Jaspar

Match Rank:5
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--AGGGTAATTA----
NTNAGGTAATTACCTT
 A C G T A C G T T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T A C G T A C G T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T

Hoxd3/MA0912.1/Jaspar

Match Rank:6
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:AGGGTAATTA------
ANGNTAATTANCNCAN
 T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:7
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:AGGGTAATTA------
ANGNTAATTANCNCAN
 T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

Hoxb5/MA0904.1/Jaspar

Match Rank:8
Score:0.82
Offset:0
Orientation:forward strand
Alignment:AGGGTAATTA------
ACGGTAATTAGCTCAT
 T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:9
Score:0.82
Offset:0
Orientation:forward strand
Alignment:AGGGTAATTA------
ACGGTAATTAGCTCAT
 T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

MEOX2/MA0706.1/Jaspar

Match Rank:10
Score:0.82
Offset:2
Orientation:forward strand
Alignment:AGGGTAATTA--
--AGTAATTAAC
 T G C A C A T G C T A G A T C G C A G T C T G A C G T A C G A T A C G T C T G A A C G T A C G T
A C G T A C G T C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C