Information for 14-AGCWWYAATKSYCMMA (Motif 20)

C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T A T C G C T A G A T G C G T A C G T C A A C G T A C G T C T G A C G T A C G A T A T C G A G T C A C G T
p-value:1e-9
log p-value:-2.235e+01
Information Content per bp:1.801
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.6 +/- 30.3bp
Average Position of motif in Background10.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGCWWYAATKSYCMMA
--CACTAATT------
 C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A
A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0024.1_Dlx5/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGCWWYAATKSYCMMA
NANNGNTAATTACCNN-
 A C G T C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A
A T G C T C G A A C T G T G C A T C A G A T G C G A C T G T C A C G T A G A C T C A G T C T G A A G T C A G T C A T G C T A G C A C G T

PH0009.1_Bsx/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCWWYAATKSYCMMA-
-CAGGTAATTACCTCAG
 C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A A C G T
A C G T T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G

PH0021.1_Dlx2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCWWYAATKSYCMMA-
-GGAATAATTACCTCAG
 C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A A C G T
A C G T T C A G T C A G C T A G C T G A G A C T C G T A C G T A C G A T A C G T C T G A A T G C G A C T G A C T G T A C C T G A A C T G

PH0022.1_Dlx3/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCWWYAATKSYCMMA
TCGCGATAATTACCGAC
 A C G T C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C

PH0156.1_Rax/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCWWYAATKSYCMMA-
TGCACTAATTAGCGCAC
 C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A A C G T
C G A T T A C G A G T C T C G A A G T C G A C T T C G A C T G A A G C T A C G T C T G A T C A G A G T C A T C G T A G C T G C A G A T C

PH0110.1_Nkx1-2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGCWWYAATKSYCMMA-
TGNACTAATTAGTGNAN
 C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A A C G T
C G A T T A C G G A T C T G C A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A G C T A C T G T G A C G T C A G T A C

PH0103.1_Meox1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGCWWYAATKSYCMMA-
-GAGGTAATTACCTCAG
 C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A A C G T
A C G T T C A G T G C A C A T G C A T G G A C T T G C A G C T A C A G T A C G T C T G A A T G C G T A C G A C T A G T C C G T A C T A G

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AGCWWYAATKSYCMMA
----NTAATTGN----
 C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A
A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGCWWYAATKSYCMMA
---GTTAATGGCC---
 C G T A A C T G A T G C C G T A C G A T A G C T C G T A C G T A A C G T A C T G A T C G G A T C A T G C G T C A G T A C C G T A
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T