Information for 4-AVTCWTAGAAATAGTT (Motif 6)

T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T
Reverse Opposite:
C G T A C T G A T G A C C A G T C T G A A C G T A C G T G C A T A G T C A C G T G C T A C G A T C T A G C G T A A G C T A C G T
p-value:1e-10
log p-value:-2.448e+01
Information Content per bp:1.648
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif3.87%
Number of Background Sequences with motif97.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets40.0 +/- 22.6bp
Average Position of motif in Background54.0 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox11/MA0869.1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AVTCWTAGAAATAGTT
-AACACTGAAATTGTT
 T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T
A C G T T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AVTCWTAGAAATAGTT
--SCCTAGCAACAG--
 T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AVTCWTAGAAATAGTT
AAACAGACAAAGGAAT----
 A C G T A C G T A C G T A C G T T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AVTCWTAGAAATAGTT
TTTCTNAGAAAN----
 T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T
A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AVTCWTAGAAATAGTT
-ATGCTAAAAATAGAA
 T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T
A C G T C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AVTCWTAGAAATAGTT---
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AVTCWTAGAAATAGTT-----
----GGAAAAATTGTTAGGAA
 T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

SOX4/MA0867.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AVTCWTAGAAATAGTT-
-AACACTGCAATTGTTC
 T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T A C G T
A C G T C G T A C T G A A G T C G T C A G T A C A G C T A C T G G T A C G T C A G T C A G A C T A G C T A C T G A G C T A C G T G A T C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AVTCWTAGAAATAGTT
---DCYAAAAATAGM-
 T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T
A C G T A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:AVTCWTAGAAATAGTT
----CCAAAAATAG--
 T C G A T C G A G C A T A G T C C G T A C A G T G T C A C T A G C G T A G T C A T C G A G A C T G C T A A C T G A G C T C G A T
A C G T A C G T A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T