Information for 2-CTGACCACVAGCGGGC (Motif 4)

A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C
Reverse Opposite:
A C T G T A G C A G T C A G T C A C T G A G T C A G C T A G C T A T C G A C G T A T C G A C T G A C G T A G T C G T C A T C A G
p-value:1e-13
log p-value:-3.020e+01
Information Content per bp:1.772
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.8 +/- 20.4bp
Average Position of motif in Background86.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTGACCACVAGCGGGC----
-TGGCCACCAGGGGGCGCTA
 A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTGACCACVAGCGGGC-----
-TGGCCACCAGGTGGCACTNT
 A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTGACCACVAGCGGGC-------
---GCCASCAGGGGGCGCYVNNG
 A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGACCACVAGCGGGC
NTGCCCANNGGTNA--
 A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCACVAGCGGGC
NNNNTGACCCGGCGCG---
 A C G T A C G T A C G T A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGACCACVAGCGGGC
NTGCCCTTGGGCGN--
 A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGACCACVAGCGGGC
-TGACCT---------
 A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:8
Score:0.52
Offset:8
Orientation:forward strand
Alignment:CTGACCACVAGCGGGC---
--------GGGCGGGAAGG
 A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTGACCACVAGCGGGC
-TGACCYCT-------
 A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CTGACCACVAGCGGGC
NNANTTGACCCCTNNNN---
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G T G C A T G A C A T G C G T C A T A G C T C G A C T G A A C T G T G A C C T A G A C T G A T C G G T A C
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G A C G T A C G T A C G T