Information for 11-CAGCGACGCT (Motif 31)

A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T
Reverse Opposite:
C T G A T A C G G T A C C T A G C G A T A T G C T C A G A T G C G A C T T A C G
p-value:1e-6
log p-value:-1.452e+01
Information Content per bp:1.511
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.01%
Number of Background Sequences with motif1070.7
Percentage of Background Sequences with motif2.24%
Average Position of motif in Targets51.3 +/- 26.3bp
Average Position of motif in Background49.1 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAGCGACGCT
CACAGN------
 A C G T A C G T A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGCGACGCT
CAGCC-----
 A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGCGACGCT----
SCAGYCADGCATGAC
 A C G T A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGCGACGCT
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T A C G T A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

PB0179.1_Sp100_2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CAGCGACGCT
NNTTTANNCGACGNA
 A C G T A C G T A C G T A C G T A C G T A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------CAGCGACGCT
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.52
Offset:-8
Orientation:reverse strand
Alignment:--------CAGCGACGCT
TCNNTTTACAGCGNNNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.52
Offset:-8
Orientation:reverse strand
Alignment:--------CAGCGACGCT
TCNNTTTACAGCGNNNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.51
Offset:-8
Orientation:reverse strand
Alignment:--------CAGCGACGCT
TCNCTTTACAGCGNNNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CAGCGACGCT-----
GCAGCCAAGCGTGACN
 A C G T A T G C C T G A T A C G A G T C T A C G G C T A G A T C C A T G A T G C G A C T A C G T A C G T A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C