Information for 3-CTTTGTTATTCAA (Motif 3)

A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A
Reverse Opposite:
A G C T C G A T T A C G G T C A C G T A A C G T C T G A C G T A A G T C C T G A T C G A C G T A C T A G
p-value:1e-13
log p-value:-3.053e+01
Information Content per bp:1.680
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif77.2
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets49.0 +/- 31.2bp
Average Position of motif in Background48.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGTTATTCAA
NNNTCCTTTGTTCTNNN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGTTATTCAA
TNNTCCTTTGTTCTNNT-
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CTTTGTTATTCAA--
CTTTGTTATGCAAAT
 A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

SOX10/MA0442.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CTTTGTTATTCAA
CTTTGT-------
 A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGTTATTCAA
NCNTTTGTTATTTNN
 A C G T A C G T A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTTATTCAA
YCTTTGTTCC----
 A C G T A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTTATTCAA
CCWTTGTYYB----
 A C G T A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTTTGTTATTCAA--
CATTGTTATGCAAAT
 A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTTATTCAA
CCTTTGTTTT----
 A C G T A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTTATTCAA
CCWTTGTY------
 A C G T A G T C C G A T A C G T A G C T T C A G A C G T A G C T G T C A C G A T A C G T A G T C G C T A T C G A
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T