Information for 18-CCGYCTGGCTRGC (Motif 28)

T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C
Reverse Opposite:
A C T G A T G C A G C T T C G A A T C G A G T C A T G C T C G A A T C G T C G A T A G C A C T G A T C G
p-value:1e-8
log p-value:-1.892e+01
Information Content per bp:1.679
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.73%
Number of Background Sequences with motif566.2
Percentage of Background Sequences with motif1.18%
Average Position of motif in Targets54.4 +/- 23.0bp
Average Position of motif in Background51.5 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCGYCTGGCTRGC
CTGTCTGG-----
T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCGYCTGGCTRGC
VBSYGTCTGG-----
A C G T A C G T T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CCGYCTGGCTRGC
-GGTCTGGCAT--
T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CCGYCTGGCTRGC
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCGYCTGGCTRGC
----TTGGCA---
T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCGYCTGGCTRGC
-WDNCTGGGCA--
T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCGYCTGGCTRGC
TWGTCTGV-----
T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCGYCTGGCTRGC
---NTTGGCANN-
T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCGYCTGGCTRGC----
--GYCTGGYYTNTGTCA
T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCGYCTGGCTRGC-----
----CTGGCAGNCTGCCA
T A G C G T A C A T C G A G C T A T G C A G C T A T C G A C T G T A G C A G C T T C G A T A C G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A