Information for 5-CTGGAACAAT (Motif 22)

A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T
Reverse Opposite:
C G T A A C G T A C G T C T A G A C G T A G C T A T G C G T A C G T C A A C T G
p-value:1e-9
log p-value:-2.146e+01
Information Content per bp:1.856
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif39.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets38.7 +/- 24.4bp
Average Position of motif in Background43.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0072.1_Sox5_1/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CTGGAACAAT-----
TTTAGAACAATAAAAT
 A C G T A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0173.1_Sox21_2/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CTGGAACAAT-----
NNNNNGAACAATTGANN
 A C G T A C G T A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CTGGAACAAT-----
TTAAGAACAATAAATT
 A C G T A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.78
Offset:4
Orientation:reverse strand
Alignment:CTGGAACAAT
----AACAAT
 A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T
A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:CTGGAACAAT
---NAACAAT
 A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T
A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CTGGAACAAT------
AATGAACAATGGAATT
 A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CTGGAACAAT------
TAGTGAACAATAGATTT
 A C G T A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CTGGAACAAT-----
TCACGGAACAATAGGTG
 A C G T A C G T A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:CTGGAACAAT--
---GAACAATGG
 A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:CTGGAACAAT--
--RNAACAATGG
 A G T C C A G T A C T G A T C G C T G A C G T A A G T C C G T A C G T A C G A T A C G T A C G T
A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G