Information for 1-GCGCCCCCTGSTG (Motif 1)

A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G
Reverse Opposite:
G T A C C T G A A T G C A G T C C G T A C T A G C T A G C A T G A C T G A C T G A T G C A T C G A T G C
p-value:1e-19
log p-value:-4.391e+01
Information Content per bp:1.783
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.62%
Number of Background Sequences with motif217.2
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets47.5 +/- 23.7bp
Average Position of motif in Background49.9 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.88
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCCCCTGSTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCCCCTGSTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---GCGCCCCCTGSTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTGSTG---
-GGCCYCCTGCTGDGH
 A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GCGCCCCCTGSTG--
---CCCCCTGCTGTG
 A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCGCCCCCTGSTG
GGTCCCGCCCCCTTCTC
 A C G T A C G T A C G T A C G T A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTGSTG---
-GACCCCCCGCTGTGC
 A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G A C G T A C G T A C G T
A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTGSTG--
-GACCCCCCGCTGTG
 A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G A C G T A C G T
A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCGCCCCCTGSTG
ANCGCGCGCCCTTNN-
 A C G T A C G T A C G T A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTGSTG---
-GACCCCCCGCTGCGC
 A T C G A T G C A T C G A G T C T A G C G T A C A G T C A G T C A C G T A C T G T A C G G A C T A C T G A C G T A C G T A C G T
A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C