Information for 4-AGACRCAGAC (Motif 9)

C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
Reverse Opposite:
A C T G C G A T A G T C C G A T A C T G A G T C A C T G C G A T A G T C A C G T
p-value:1e-11
log p-value:-2.565e+01
Information Content per bp:1.778
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.09%
Number of Background Sequences with motif294.2
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets58.0 +/- 23.9bp
Average Position of motif in Background50.0 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGACRCAGAC
CCAGACRSVB--
 A C G T A C G T C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACRCAGAC
CCAGACAG----
 A C G T A C G T C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGACRCAGAC
BCAGACWA----
 A C G T A C G T C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGACRCAGAC
AAACCACAGAN
 A C G T C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGACRCAGAC--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGACRCAGAC
--ACAAAG--
 C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------AGACRCAGAC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGACRCAGAC
---CACAGN-
 C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGACRCAGAC
AAAACAATGG-
 A C G T C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGACRCAGAC
AAAACAAAGG-
 A C G T C G T A C T A G C G T A A G T C C T A G G T A C G C T A C T A G G C T A G T A C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T