Information for 4-YTATATRGRSVGC (Motif 7)

A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C
Reverse Opposite:
A C T G A G T C A C G T A T C G A G C T A G T C A G C T G C T A A C G T C T G A A C G T G T C A C T G A
p-value:1e-11
log p-value:-2.747e+01
Information Content per bp:1.710
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif36.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets43.4 +/- 31.7bp
Average Position of motif in Background50.0 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:YTATATRGRSVGC--
GTATAAAAGGCGGGG
 A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:YTATATRGRSVGC--
GTATAAAAGGCGGGG
 A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0128.1_Gcm1_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---YTATATRGRSVGC-
TGCGCATAGGGGAGGAG
 A C G T A C G T A C G T A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--YTATATRGRSVGC
CCTTTTATAGNC---
 A C G T A C G T A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T A C G T

SRF/MA0083.3/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----YTATATRGRSVGC
TGNCCATATATGGTCA--
 A C G T A C G T A C G T A C G T A C G T A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:YTATATRGRSVGC-
--ACAAAGGNBCCT
 A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C A C G T
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:YTATATRGRSVGC
--ACAAAG-----
 A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:8
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----YTATATRGRSVGC
TNCCATATATGG-----
 A C G T A C G T A C G T A C G T A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:YTATATRGRSVGC
NNATAAGGNN---
 A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--YTATATRGRSVGC
CCATATATGG-----
 A C G T A C G T A G C T C A G T C G T A A G C T C G T A C G A T C T G A C T A G C T G A A T G C T G C A C T A G G T A C
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T A C G T A C G T