Information for 1-VCYKSCGCCG (Motif 2)

T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G
Reverse Opposite:
G T A C A C T G A T C G A T G C C A T G A T C G G T A C C T G A A T C G A G T C
p-value:1e-18
log p-value:-4.174e+01
Information Content per bp:1.607
Number of Target Sequences with motif576.0
Percentage of Target Sequences with motif61.41%
Number of Background Sequences with motif21898.0
Percentage of Background Sequences with motif47.05%
Average Position of motif in Targets50.4 +/- 24.8bp
Average Position of motif in Background50.3 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--VCYKSCGCCG-----
TACGCCCCGCCACTCTG
 A C G T A C G T T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G A C G T A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---VCYKSCGCCG----
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---VCYKSCGCCG----
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G A C G T A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:VCYKSCGCCG
-AGCGCGCC-
 T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G
A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---VCYKSCGCCG--
ATTGCCTCAGGCAAT
 A C G T A C G T A C G T T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G A C G T A C G T
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T

Sp1(Zf)/Promoter/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:VCYKSCGCCG--
GGCCCCGCCCCC
 T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G A C G T A C G T
T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

SP2/MA0516.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:VCYKSCGCCG------
-GCCCCGCCCCCTCCC
 T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

POL011.1_XCPE1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:VCYKSCGCCG
GGTCCCGCCC
 T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G
A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-VCYKSCGCCG---
NAGCCCCGCCCCCN
 A C G T T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G A C G T A C G T A C G T
G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:VCYKSCGCCG---
-GCTCCGCCCMCY
 T C A G A T G C G A C T C A T G A T G C G T A C A T C G A T G C A G T C C A T G A C G T A C G T A C G T
A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T