Information for 7-CGGCAGACGGCTC (Motif 15)

A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C
Reverse Opposite:
C T A G G T C A A C T G A G T C A G T C A T C G A C G T A G T C G A C T A T C G A T G C G T A C A T C G
p-value:1e-8
log p-value:-2.051e+01
Information Content per bp:1.801
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif64.2
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets53.1 +/- 24.2bp
Average Position of motif in Background42.1 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGGCAGACGGCTC-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGGCAGACGGCTC
CCGCCCAAGGGCAG
 A C G T A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGGCAGACGGCTC
TGCCCNGGGGCA-
 A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CGGCAGACGGCTC--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGGCAGACGGCTC
-AACAGATGGC--
 A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C
A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CGGCAGACGGCTC
--CCAGACRSVB-
 A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:CGGCAGACGGCTC
--------NGCTN
 A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGGCAGACGGCTC
--CCAGACAG---
 A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGGCAGACGGCTC---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGGCAGACGGCTC
TGCCCTNGGGCA-
 A T G C A C T G A T C G A T G C C G T A A C T G T G C A A T G C A C T G A C T G A G T C A C G T A G T C
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T