Information for 7-CTTTTTTAAT (Motif 12)

A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T
Reverse Opposite:
G T C A A C G T G C A T C G T A G T C A C G T A C T G A C G T A C T G A A C T G
p-value:1e-10
log p-value:-2.370e+01
Information Content per bp:1.911
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif49.4
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets62.5 +/- 26.7bp
Average Position of motif in Background53.0 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0129.1_Glis2_2/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTTAAT---
TCTTTANTAATANN
 A C G T A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:CTTTTTTAAT
----TTTAAT
 A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTTAAT----
NNNTTTNTAATACNG
 A C G T A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTTTTTTAAT---
---TTTTTATTGC
 A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

Arid3b/MA0601.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTTTTTTAAT---
--ATATTAATTAA
 A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTTTTTTAAT-
--ATTTGAATT
 A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTTAAT---
TTTTTTTTCNNGTN
 A C G T A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CTTTTTTAAT----
----TTTAATTGCN
 A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CTTTTTTAAT----
----NTTAATTAGN
 A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

PH0091.1_Lhx1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTTTTTTAAT-------
NNTTATTAATTAATNCN
 A G T C A G C T C G A T A G C T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A C G A T C G A T C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T G C A T A G T C A C T G