Information for 5-CACAGCAGGS (Motif 4)

G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G
Reverse Opposite:
A T G C T G A C G T A C A G C T T C A G A T G C C G A T C A T G C A G T C A T G
p-value:1e-32
log p-value:-7.369e+01
Information Content per bp:1.597
Number of Target Sequences with motif160.0
Percentage of Target Sequences with motif21.80%
Number of Background Sequences with motif3700.1
Percentage of Background Sequences with motif7.74%
Average Position of motif in Targets49.7 +/- 25.7bp
Average Position of motif in Background50.7 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CACAGCAGGS--
CACAGCAGGGGG
 G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---CACAGCAGGS--
CCACACAGCAGGAGA
 A C G T A C G T A C G T G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---CACAGCAGGS--
GAGCACAGCAGGACA
 A C G T A C G T A C G T G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---CACAGCAGGS--
CCACACAGCAGGAGA
 A C G T A C G T A C G T G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCAGGS----
DCHCAGCAGGRGGCC
 A C G T G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCAGGS
DCTCAGCAGG-
 A C G T G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CACAGCAGGS----
CACAGCGGGGGGTC
 G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G A C G T A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCAGGS----
NCGCAGCGGGGGGTC
 A C G T G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G A C G T A C G T A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCAGGS----
NCNCAGCGGGGGGTC
 A C G T G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G A C G T A C G T A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CACAGCAGGS
CACAGN----
 G T A C G T C A G T A C G C T A T A C G A G T C T C G A C A T G A C T G T A C G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T