Information for 15-GCAGCAGAGGGTTTTT (Motif 20)

A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
Reverse Opposite:
C G T A C G T A C G T A C G T A C G T A A T G C A T G C A G T C A G C T G T A C A C G T A C T G A G T C A C G T A C T G A T G C
p-value:1e-10
log p-value:-2.339e+01
Information Content per bp:1.918
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 19.1bp
Average Position of motif in Background25.6 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC3/MA0697.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCAGAGGGTTTTT
NCGCAGCGGGGGGTC---
 A C G T A C G T A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGAGGGTTTTT
CACAGCGGGGGGTC---
 A C G T A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGAGGGTTTTT
CACAGCAGGGGG-----
 A C G T A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCAGAGGGTTTTT
NCNCAGCGGGGGGTC---
 A C G T A C G T A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAGCAGAGGGTTTTT
--AACAGATGGT----
 A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCAGAGGGTTTTT
DCHCAGCAGGRGGCC---
 A C G T A C G T A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCAGCAGAGGGTTTTT
--AACAGATGGTCN--
 A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
A C G T A C G T C G T A T G C A G T A C C G T A A C T G T G C A A C G T A T C G A C T G G A C T A T G C C A T G A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCAGCAGAGGGTTTTT
--AACAGATGGC----
 A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGAGGGTTTTT
ANCAGCTG---------
 A C G T A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGAGGGTTTTT
CGCAGCTGCG-------
 A C G T A T C G A G T C C G T A A C T G A G T C C G T A A C T G T C G A A C T G A T C G A T C G A C G T C G A T A C G T C G A T A C G T
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T