Information for 1-ARAACAAWGG (Motif 2)

T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G
Reverse Opposite:
A T G C A G T C C G A T A C G T A C G T A C T G A C G T A G C T G A T C A C G T
p-value:1e-59
log p-value:-1.363e+02
Information Content per bp:1.709
Number of Target Sequences with motif252.0
Percentage of Target Sequences with motif32.68%
Number of Background Sequences with motif5070.1
Percentage of Background Sequences with motif10.79%
Average Position of motif in Targets53.4 +/- 25.0bp
Average Position of motif in Background49.9 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:1
Score:0.96
Offset:1
Orientation:forward strand
Alignment:ARAACAAWGG-
-RAACAATGGN
 T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G A C G T
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:ARAACAAWGG
AAAACAATGG
 T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:ARAACAAWGG
VRRACAAWGG
 T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:ARAACAAWGG
RNAACAATGG
 T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.95
Offset:2
Orientation:reverse strand
Alignment:ARAACAAWGG
--RACAAWGG
 T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:ARAACAAWGG
AAAACAAAGG
 T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:ARAACAAWGG-
-GAACAATGGN
 T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:ARAACAAWGG
VRAACAATGG
 T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---ARAACAAWGG----
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---ARAACAAWGG----
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T T G C A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A