Information for 13-CAKRKTAATKAAAAAC (Motif 22)

A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C
Reverse Opposite:
A C T G A C G T G C A T C G A T A C G T A C G T G T A C C G T A A G C T C G A T C G T A G T C A A G T C G T C A A C G T A T C G
p-value:1e-9
log p-value:-2.222e+01
Information Content per bp:1.777
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.6 +/- 29.8bp
Average Position of motif in Background47.4 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0101.1_Lmx1b/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CAKRKTAATKAAAAAC-
NNAATTAATTAAAAANN
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T

PH0100.1_Lmx1a/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CAKRKTAATKAAAAAC-
CGAATTAATTAAAAACC
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C

PH0095.1_Lhx5/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAKRKTAATKAAAAAC-
CGAATTAATTAAATACT
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T

PH0091.1_Lhx1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAKRKTAATKAAAAAC-
CGAATTAATTAATAATG
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
T G A C T C A G C G T A C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C A T G C T A G C T A G A C T A C T G

PH0059.1_Hoxb4/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAKRKTAATKAAAAAC-
CGCGTTAATTAATTACC
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
T A G C C T A G G T A C C T A G G A C T G A C T G T C A C G T A C G A T A C G T C T G A C T G A A G C T G C A T T G C A G T A C A G T C

PH0071.1_Hoxc6/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CAKRKTAATKAAAAAC-
CAAATTAATTAATAAAA
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
A G T C C T G A G C T A T C G A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A C G T C G T A T C G A T G C A C G T A

PH0051.1_Hoxa4/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CAKRKTAATKAAAAAC-
CNAGTTAATTAATAANN
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
T G A C T C G A G T C A T C A G G C A T G A C T G T C A C G T A G A C T A C G T C T G A C G T A A G C T C T G A C T G A G A C T G A T C

PH0093.1_Lhx3/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CAKRKTAATKAAAAAC-
GAAATTAATTAAATAAT
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T

PH0069.1_Hoxc4/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CAKRKTAATKAAAAAC-
CGAATTAATTAACAATA
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
T G A C T C A G G T C A C T G A G C A T G A C T G T C A C G T A C G A T A C G T C T G A C G T A A G T C G C T A T G C A G C A T G T C A

PH0128.1_Otp/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CAKRKTAATKAAAAAC-
CNNATTAATTAATTNNN
 A T G C C G T A A C G T C T A G A C G T A C G T C G T A C T G A A C G T C A T G G T C A C G T A G C T A C G T A G T C A A G T C A C G T
G T A C G T A C G T C A T C G A G A C T G A C T T C G A C T G A A G C T A C G T C T G A C T G A A G C T C G A T C T G A A G T C A C T G