Information for 1-CYWTTGTHATGCAAAT (Motif 1)

A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T
Reverse Opposite:
C G T A A G C T G A C T C G A T T C A G G T A C C G T A G C A T C G T A C G T A A T G C G T C A C G T A C G T A C T A G T C A G
p-value:1e-180
log p-value:-4.165e+02
Information Content per bp:1.651
Number of Target Sequences with motif137.0
Percentage of Target Sequences with motif18.66%
Number of Background Sequences with motif181.0
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets54.0 +/- 21.7bp
Average Position of motif in Background52.3 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.97
Offset:1
Orientation:forward strand
Alignment:CYWTTGTHATGCAAAT
-CTTTGTTATGCAAAT
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:CYWTTGTHATGCAAAT
-CATTGTTATGCAAAT
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.74
Offset:6
Orientation:reverse strand
Alignment:CYWTTGTHATGCAAAT
------TTATGCAAAT
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.73
Offset:6
Orientation:reverse strand
Alignment:CYWTTGTHATGCAAAT---
------ATATGCAAATNNN
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.72
Offset:6
Orientation:forward strand
Alignment:CYWTTGTHATGCAAAT--
------TTATGCAAATTA
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CYWTTGTHATGCAAAT----
----TTGTATGCAAATTAGA
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CYWTTGTHATGCAAAT----
----TTGTATGCAAATTAGA
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.71
Offset:7
Orientation:forward strand
Alignment:CYWTTGTHATGCAAAT
-------TATGCAAAT
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.71
Offset:7
Orientation:forward strand
Alignment:CYWTTGTHATGCAAAT---
-------TATGCWAATBAV
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CYWTTGTHATGCAAAT----
----TTGTATGCAAATTAGA
 A G T C G A T C G C A T A C G T C A G T T A C G C G A T G C A T C G T A A C G T A C T G A G T C C G T A C T G A T C G A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A