Information for 6-TTKRRCCTKGCTG (Motif 6)

C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G
Reverse Opposite:
G T A C C G T A C T A G A G T C G T A C C G T A A C T G A C T G A G T C A G C T G T C A C G T A C G T A
p-value:1e-10
log p-value:-2.413e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.7 +/- 25.3bp
Average Position of motif in Background44.4 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTKRRCCTKGCTG
BNTGDCCTTG---
 C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:TTKRRCCTKGCTG
--------NGCTN
 C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:TTKRRCCTKGCTG---
------CCTGCTGAGH
 C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTKRRCCTKGCTG-
GTCATGCHTGRCTGS
 A C G T C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

ESRRB/MA0141.3/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TTKRRCCTKGCTG
NATGACCTTGA--
 C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TTKRRCCTKGCTG
NNTGTTTATTTTGGCA-
 A C G T A C G T A C G T A C G T C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TTKRRCCTKGCTG
--TGACCTTGAV-
 C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TTKRRCCTKGCTG-
NNNNATGACCTTGANTN
 A C G T A C G T A C G T C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.53
Offset:9
Orientation:forward strand
Alignment:TTKRRCCTKGCTG--
---------GCTGTG
 C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TTKRRCCTKGCTG--
---CCCCCTGCTGTG
 C G A T A C G T A C G T C T G A C T A G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G