Information for 5-AAAGAAAGCC (Motif 4)

T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
Reverse Opposite:
C A T G A C T G T A G C G A C T A G C T G C A T A T G C C G A T A G C T A C G T
p-value:1e-20
log p-value:-4.720e+01
Information Content per bp:1.655
Number of Target Sequences with motif140.0
Percentage of Target Sequences with motif19.28%
Number of Background Sequences with motif3854.8
Percentage of Background Sequences with motif8.20%
Average Position of motif in Targets47.3 +/- 27.6bp
Average Position of motif in Background49.2 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AAAGAAAGCC
AAAACAAAGG-
 A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:2
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------AAAGAAAGCC
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------AAAGAAAGCC
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

FOXP1/MA0481.1/Jaspar

Match Rank:4
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------AAAGAAAGCC
CAAAAGTAAACAAAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AAAGAAAGCC
TACTGGAAAAAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AAAGAAAGCC
GAAAGTGAAAGT-
 A C G T A C G T A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAAGAAAGCC
GGAACAAAGR-
 A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AAAGAAAGCC---
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AAAGAAAGCC
AGAAACGAAAGT-
 A C G T A C G T A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AAAGAAAGCC
VRRACAAWGG-
 A C G T T C G A T C G A G C T A T A C G C G T A T C G A C T G A A T C G T G A C G T A C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T