Information for 1-NVARGGGATTARV (Motif 1)

T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
Reverse Opposite:
A C T G A G C T C G A T C G T A C G T A C A G T A G T C G A T C G A T C G A T C G A C T A G C T A G C T
p-value:1e-125
log p-value:-2.884e+02
Information Content per bp:1.552
Number of Target Sequences with motif353.0
Percentage of Target Sequences with motif48.62%
Number of Background Sequences with motif5798.4
Percentage of Background Sequences with motif12.33%
Average Position of motif in Targets51.4 +/- 21.1bp
Average Position of motif in Background50.7 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.95
Offset:3
Orientation:reverse strand
Alignment:NVARGGGATTARV
---VRGGATTARN
 T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.95
Offset:1
Orientation:forward strand
Alignment:NVARGGGATTARV
-AAGAGGATTAG-
 T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.94
Offset:4
Orientation:reverse strand
Alignment:NVARGGGATTARV
----GGGATTANN
 T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.93
Offset:4
Orientation:reverse strand
Alignment:NVARGGGATTARV
----GGGATTAA-
 T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.93
Offset:4
Orientation:forward strand
Alignment:NVARGGGATTARV
----RGGATTAR-
 T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:NVARGGGATTARV
---NNGGATTAGN
 T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

PH0137.1_Pitx1/Jaspar

Match Rank:7
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-NVARGGGATTARV---
TTAGAGGGATTAACAAT
 A C G T T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:NVARGGGATTARV
---NGGGATTA--
 T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.92
Offset:4
Orientation:reverse strand
Alignment:NVARGGGATTARV
----NGGATTAA-
 T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.91
Offset:3
Orientation:reverse strand
Alignment:NVARGGGATTARV
---GNGGATTAGN
 T C G A T C G A C T G A C T A G C T A G C T A G T C A G G T C A C G A T C G A T G C T A T C G A T G A C
A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G