Information for 4-RACAAARGSACHN (Motif 3)

T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
Reverse Opposite:
A C T G C A T G T C A G C A G T A T C G A G T C A G C T G C A T C A G T C A G T A T C G G A C T A G C T
p-value:1e-29
log p-value:-6.869e+01
Information Content per bp:1.523
Number of Target Sequences with motif131.0
Percentage of Target Sequences with motif17.44%
Number of Background Sequences with motif2602.2
Percentage of Background Sequences with motif5.60%
Average Position of motif in Targets49.6 +/- 25.4bp
Average Position of motif in Background48.9 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:RACAAARGSACHN
RACAAWGG-----
 T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--RACAAARGSACHN
AAAACAAAGG-----
 A C G T A C G T T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----RACAAARGSACHN
AGAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--RACAAARGSACHN
VRRACAAWGG-----
 A C G T A C G T T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-RACAAARGSACHN
GAACAATGGN----
 A C G T T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.85
Offset:-5
Orientation:forward strand
Alignment:-----RACAAARGSACHN
ATAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--RACAAARGSACHN
RNAACAATGG-----
 A C G T A C G T T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-RACAAARGSACHN
RAACAATGGN----
 A C G T T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:RACAAARGSACHN
AACAAAGG-----
 T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--RACAAARGSACHN
GGAACAAAGR-----
 A C G T A C G T T C G A C T G A T A G C G T C A G T C A C G T A T C G A T C A G T A G C G T C A A G T C G A T C T G A C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T