Information for 17-RAGMCAAKGGCTG (Motif 28)

T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
Reverse Opposite:
G T A C C G T A A T C G A G T C G T A C G T C A C G A T A C G T A C T G A C G T G T A C A C G T A G C T
p-value:1e-9
log p-value:-2.145e+01
Information Content per bp:1.795
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.1 +/- 34.1bp
Average Position of motif in Background48.3 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RAGMCAAKGGCTG
AAAACAATGG---
 T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RAGMCAAKGGCTG
CTCACACAATGGCGC
 A C G T A C G T T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:RAGMCAAKGGCTG
-RAACAATGGN--
 T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RAGMCAAKGGCTG
VRAACAATGG---
 T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RAGMCAAKGGCTG
--AACAAAGG---
 T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RAGMCAAKGGCTG
--RACAAWGG---
 T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RAGMCAAKGGCTG
-AGCCAATCGG--
 T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RAGMCAAKGGCTG
AAAACAAAGG---
 T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RAGMCAAKGGCTG
-GAACAATGGN--
 T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RAGMCAAKGGCTG
RNAACAATGG---
 T C G A C G T A A C T G G T C A A G T C C G T A G C T A A C G T A C T G A C T G A T G C A C G T A C T G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T