Information for 19-AAAGCCAGACAMAGGG (Motif 22)

C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
Reverse Opposite:
A T G C G A T C G A T C G A C T A C G T A C G T A C T G C G A T A T G C G A C T A C T G A C T G G T A C G A C T A G C T A C G T
p-value:1e-10
log p-value:-2.309e+01
Information Content per bp:1.668
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.8 +/- 19.1bp
Average Position of motif in Background30.2 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AAAGCCAGACAMAGGG
-ATGCCAGACN-----
 C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAAGCCAGACAMAGGG
CAAATCCAGACATCACA
 A C G T C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AAAGCCAGACAMAGGG
----CCAGACAG----
 C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AAAGCCAGACAMAGGG
AAAAGTCAA--------
 A C G T C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AAAGCCAGACAMAGGG
-----AAAACAAAGG-
 C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAAGCCAGACAMAGGG--
--AAACAGACAAAGGAAT
 C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G A C G T A C G T
A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AAAGCCAGACAMAGGG
----BCAGACWA----
 C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AAAGCCAGACAMAGGG
----CCAGACRSVB--
 C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AAAGCCAGACAMAGGG
AGGTGHCAGACA-----
 A C G T C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:AAAGCCAGACAMAGGG
-------RACAAWGG-
 C G T A T C G A C G T A A C T G G T A C A G T C C G T A T A C G C G T A G T A C C G T A G T C A C T G A C T A G C T A G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T