Information for 1-VNBNVRRGGGATTARV (Motif 1)

T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
Reverse Opposite:
A T G C G A T C G C A T C G T A C G T A A C G T A G T C A G T C A G T C G A T C G A C T A G T C T A G C T G A C G A T C A T C G
p-value:1e-151
log p-value:-3.489e+02
Information Content per bp:1.531
Number of Target Sequences with motif228.0
Percentage of Target Sequences with motif30.36%
Number of Background Sequences with motif1454.6
Percentage of Background Sequences with motif3.13%
Average Position of motif in Targets51.4 +/- 20.0bp
Average Position of motif in Background49.4 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.96
Offset:6
Orientation:reverse strand
Alignment:VNBNVRRGGGATTARV
------VRGGATTARN
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.96
Offset:7
Orientation:reverse strand
Alignment:VNBNVRRGGGATTARV
-------GGGATTANN
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.95
Offset:7
Orientation:reverse strand
Alignment:VNBNVRRGGGATTARV
-------GGGATTAA-
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.94
Offset:6
Orientation:reverse strand
Alignment:VNBNVRRGGGATTARV
------NNGGATTAGN
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.94
Offset:8
Orientation:reverse strand
Alignment:VNBNVRRGGGATTARV
--------GGATTAGC
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:6
Score:0.94
Offset:7
Orientation:forward strand
Alignment:VNBNVRRGGGATTARV
-------RGGATTAR-
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.93
Offset:6
Orientation:reverse strand
Alignment:VNBNVRRGGGATTARV
------GNGGATTAGN
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.93
Offset:4
Orientation:forward strand
Alignment:VNBNVRRGGGATTARV
----AAGAGGATTAG-
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.93
Offset:7
Orientation:reverse strand
Alignment:VNBNVRRGGGATTARV
-------NGGATTAA-
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.92
Offset:6
Orientation:reverse strand
Alignment:VNBNVRRGGGATTARV
------NGGGATTA--
 T A G C C A T G A C T G A C T G T C A G C T G A C T A G C T A G C T A G C T A G T G C A A C G T G C A T C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T