Information for 2-TTGTTATGCAAAT (Motif 2)

A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T
Reverse Opposite:
C G T A A G C T G A C T C G A T C T A G T G A C G C T A G C A T T C G A C T G A A G T C G C T A C T G A
p-value:1e-41
log p-value:-9.533e+01
Information Content per bp:1.643
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif8.26%
Number of Background Sequences with motif301.1
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets45.6 +/- 25.9bp
Average Position of motif in Background52.6 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--TTGTTATGCAAAT
CATTGTTATGCAAAT
 A C G T A C G T A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--TTGTTATGCAAAT
CTTTGTTATGCAAAT
 A C G T A C G T A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.82
Offset:3
Orientation:reverse strand
Alignment:TTGTTATGCAAAT
---TTATGCAAAT
 A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TTGTTATGCAAAT----
-TTGTATGCAAATTAGA
 A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TTGTTATGCAAAT----
-TTGTATGCAAATTAGA
 A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.79
Offset:4
Orientation:forward strand
Alignment:TTGTTATGCAAAT
----TATGCAAAT
 A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T
A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.79
Offset:1
Orientation:forward strand
Alignment:TTGTTATGCAAAT----
-TTGTATGCAAATTAGA
 A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T A C G T A C G T A C G T A C G T
A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.79
Offset:3
Orientation:forward strand
Alignment:TTGTTATGCAAAT--
---TTATGCAAATTA
 A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.78
Offset:4
Orientation:forward strand
Alignment:TTGTTATGCAAAT
----TATGCAAAT
 A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T
A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.78
Offset:2
Orientation:forward strand
Alignment:TTGTTATGCAAAT-
--AATATGCAAATT
 A G C T C G A T T C A G G A C T A G C T C G T A C G A T A C T G A G T C G C T A C T G A T C G A G C A T A C G T
A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T