Information for 10-GRAATTCMYYCCA (Motif 18)

A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G C T A G T C G A C A G T A C T G C G T A C G T A A C G T A G C T A G T C A G T C
p-value:1e-9
log p-value:-2.245e+01
Information Content per bp:1.872
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.8 +/- 19.6bp
Average Position of motif in Background27.4 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0171.1_Sox18_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GRAATTCMYYCCA
NNNNTGAATTCANNNC-
 A C G T A C G T A C G T A C G T A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GRAATTCMYYCCA
GGAAATTCCC----
 A C G T A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GRAATTCMYYCCA
GGAAATTCCC----
 A C G T A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GRAATTCMYYCCA
NCTGGAATGC------
 A C G T A C G T A C G T A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A
G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GRAATTCMYYCCA-
----ATCACCCCAT
 A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GRAATTCMYYCCA-
----ATCACCCCAT
 A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GRAATTCMYYCCA
GGGGATTCCCCC--
 A C G T A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T A C G T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GRAATTCMYYCCA
CCWGGAATGY------
 A C G T A C G T A C G T A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A
T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GRAATTCMYYCCA--
-ACATTCATGACACG
 A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A A C G T A C G T
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GRAATTCMYYCCA
GGGAAATCCCCN--
 A C G T A C T G C T A G C T G A C G T A A C G T A C G T A G T C G T C A A G C T A G T C A G T C A G T C C G T A
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T