Information for 13-CCTTTTGTCA (Motif 16)

A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A
Reverse Opposite:
C G A T T A C G C G T A A G T C C G T A C T G A C G T A C T G A C A T G C T A G
p-value:1e-10
log p-value:-2.487e+01
Information Content per bp:1.845
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif166.4
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets60.2 +/- 31.5bp
Average Position of motif in Background51.3 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCTTTTGTCA
-CCWTTGTY-
 A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.72
Offset:4
Orientation:forward strand
Alignment:CCTTTTGTCA--
----YTGWCADY
 A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:CCTTTTGTCA-
----NTGTCAN
 A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCTTTTGTCA-
-CCTTTGTTTT
 A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CCTTTTGTCA---
-----TGTCANYT
 A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCTTTTGTCA
-CCTTTGTT-
 A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCTTTTGTCA-
---CCTGTCAA
 A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A A C G T
A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCTTTTGTCA-----
NCNTTTGTTATTTNN
 A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCTTTTGTCA-
-CCATTGTTNY
 A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCTTTTGTCA----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A G T C G A T C G A C T A C G T A G C T A C G T A C T G C G A T A T G C C G T A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T