Information for 10-ATGCAAATTA (Motif 20)

C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A
Reverse Opposite:
A G C T T C G A C T G A A C G T A C G T C G A T C T A G T A G C C G T A A C G T
p-value:1e-8
log p-value:-2.013e+01
Information Content per bp:1.822
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif267.5
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets43.0 +/- 24.9bp
Average Position of motif in Background49.8 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0144.1_Pou2f2/Jaspar

Match Rank:1
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATTA--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Pou2f3/MA0627.1/Jaspar

Match Rank:2
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATTA--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:3
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATTA--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAATTA-
ATATGCAAATNNN
 A C G T A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAATTA-
WATGCAAATGAG
 A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAATTA-
TATGCWAATBAV
 A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F2/MA0787.1/Jaspar

Match Rank:7
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--ATGCAAATTA
TTATGCAAATTA
 A C G T A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU1F1/MA0784.1/Jaspar

Match Rank:8
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---ATGCAAATTA-
AATATGCAAATTAG
 A C G T A C G T A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A A C G T
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

POU3F1/MA0786.1/Jaspar

Match Rank:9
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--ATGCAAATTA
TTATGCAAATTA
 A C G T A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAATTA
TTATGCAAAT--
 A C G T A C G T C G T A A C G T A T C G G A T C G C T A C G T A G T C A A G C T A G C T T C G A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T